hall-lab/protocols hall-lab/protocols

  • Stars
    star
    2
  • Language
    Shell
  • Created over 9 years ago
  • Updated over 8 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
hall-lab/protocols
github

hall-lab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Hall lab analysis protocols

More Repositories

1

speedseq

A flexible framework for rapid genome analysis and interpretation
C
314
star
2

svtools

Tools for processing and analyzing structural variants.
Python
148
star
3

svtyper

Bayesian genotyper for structural variants
Python
126
star
4

sv-pipeline

Pipeline for structural variation detection in cohorts
WDL
48
star
5

gtex

GTEx analysis scripts
Python
20
star
6

competitive-alignment

Shell
10
star
7

long-read-validation

Long-read validation of BEDPE structural variation
Python
9
star
8

assembly_validation

Python
5
star
9

fastqtl

Fork of FastQTL for SVs
C++
5
star
10

1kg_sv_comparison

Python
4
star
11

sv_paper_042020

supplementary data for abel et al paper
4
star
12

extract_sv_reads

Tool for extracting splitter or discordant reads from a BAM or CRAM file.
Python
4
star
13

io

i/o tools
Python
2
star
14

cluster_intro

Hall Lab Computing 101
2
star
15

cshl_sv_2016

Python
2
star
16

bamkit

Tools for common BAM file manipulations
Python
2
star
17

cromwell-deployment

Scripts and configuration to setup a Cromwell deployment
Python
2
star
18

tenx-gcp

Run 10X Genomics Software in Google Cloud Deployments
Python
1
star
19

gatk4-germline-snv-pipeline

GATK4 pipeline for joint variant calling (SNP/INDELs)
WDL
1
star
20

lumpy-merge

Python
1
star