guokai8/NGS

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R
Created over 8 years ago
Updated almost 4 years ago

guokai8/NGS

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List everything related with NGS

scGSVA

scGSVA: Perform GSVA for single cell RNA seq

VennDetail

VennDetail: a bioconductor package for VennDiagram visualization and details extraction

eoffice

Export and import graphics and tables to MicroSoft office

CandiHap

Build haplotye and generate figures

bioAnno

Build Annotation package by using information from KEGG, NCBI, Ensembl

microbial

Do microbiome analysis with dada2 and phyloseq object

EnrichR

Functional Enrichment Analysis and Network Construction

rcellmarker

Identify cell type based on cell markers for single cell squencing

seq2Fun

seq2Fun provides function to annotate protein or coding sequences with KEGG pathways

gff2gene

Plot gene structure

richR

Function Enrichment analysis and Network construction

o2plsda

Omics data integration with o2plsda

IBD

rcolors

Functions with r colors

org.Si.eg.db

Anntation database for Setaria italica

biotiny

Collection of Tiny Tools For Bioinformatics

bomics

Integrate multiple omics data

EAT

Scripts used for EAT

GWAS

GWAS related things

ggFormat

Provide consistent format for publication

COVID19

single cell analysis code

VennDetail-Shiny

Shiny version for VennDetail

ro2pls

scRNAseq-training