grunwaldlab/phytophthora_id grunwaldlab/phytophthora_id

  • Stars
    star
    1
  • Language
    JavaScript
  • Created over 11 years ago
  • Updated almost 9 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
grunwaldlab/phytophthora_id
github

grunwaldlab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Webpage of Phytophthora ID of the Grunwald lab.

More Repositories

1

metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
R
135
star
2

Population_Genetics_in_R

A primer for computational tools to analyze genetics of populations in R
HTML
84
star
3

poppr

🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
R
68
star
4

analysis_of_microbiome_community_data_in_r

This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/
HTML
17
star
5

Reproducible-science-in-R

This site provides information on conducting reproducible science using the R language.
HTML
14
star
6

krisp

A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.
Python
10
star
7

effectR

An R package to call oomycete effectors
R
10
star
8

quiltr

R package for making website representations of directories
R
5
star
9

Microbe-ID

Microbe-ID
JavaScript
4
star
10

aps_workshop

2
star
11

audpc_example

An example analysis for calculating AUDPC using RMarkdown
HTML
2
star
12

psminer

Work in progress. Backend for pathogensurveillance
R
2
star
13

supplementary-poppr-2.0

Supplementary materials for Frontiers paper on novel R tools for population genomics
HTML
2
star
14

metacoder_documentation

Documentation for the metacoder R package
HTML
2
star
15

popgen_review_examples

Examples for population genetics review manuscript
HTML
1
star
16

ezec

Easy Interface to Effective Concentration Calculations
R
1
star
17

labtools

An R package for lab notebook upkeep
R
1
star
18

Supplements_Knaus_Pinfestans_CNV

Supplements for Knaus et al. manuscript on changes variation in genic copy number in Phytophthora infestans and relatives.
1
star
19

OomyceteDB

A new barcode for characterizing oomycete communities.
HTML
1
star
20

poppr-poster-aps-2016

source data for the APS 2016 poster on Tools for analysis of clonal population genetic data in R
HTML
1
star
21

bioinformatics_practice

Record of exercises done to learn bioinformatics
R
1
star