grenaud/trieFinder

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2
Language
C++
Created about 12 years ago
Updated over 9 years ago

grenaud/trieFinder

grenaud

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The trieFinder program is designed to rapidly map Digital Gene Expression (DGE) tags of various lengths to RefSeq, UniGene, and/or genomic sequences. It annotates the tags with information from the sequence files, providing output in a format that is amenable to both transcript quantification and the detection of novel transcripts.

deML

Maximum likelihood demultiplexing

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command-line tools for the management of genotype likelihoods and allele counts

leeHom

Bayesian reconstruction of ancient DNA fragments

gargammel

gargammel is an ancient DNA simulator

schmutzi

Maximum a posteriori estimate of contamination for ancient samples

vgan

Suite of tools for pangenomics built using vg

ROHan

Joint inference of heterozygosity rates and runs of homozygosity

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BCL2BAM2FASTQ

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quick benchmarking to check the best way to transform DNA letters to integers

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VCFparser

C++ library for parsing VCF files

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SAFARI

Sensitive Alignments from a RYmer Index

libgab

A C++ class of useful little functions

bam2prof

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mitochondrialSimulator

A simple mitochondrial simulator

mappability_snpable