gilesc/seqsei

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Language
R
Created about 13 years ago
Updated about 13 years ago

gilesc/seqsei

gilesc

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Functional prediction for genes & non-coding elements

mdbread

Cross-platform Python reader for MS Access files

factor-graph

Belief propagation over factor graphs in directed & undirected PGMs

nlptk

NLP utilities (NER, parsers, corpus readers), wrapped in Clojure.

pkgbuild

Arch Linux PKGBUILDs, mostly for bioinformatics-related programs.

ahocorasick

Fast string searching in various languages (Clojure, C++)

GenomicRegions.jl

Julia package for handling sets of genomic regions, with in-memory and on-disk indexing capabilities.

scet

Significantly Co-occurring Entities in Text

pubmed-elasticsearch

lein-chronic

Schedule leiningen tasks for timed execution.

gseconvert

Constructs and preprocesses a gene expression matrix from raw GSEs for use in meta-analyses

litberator

Retrieve PDFs from a PubMed query string

xbxnotify

Notifies an e-mail address (for example, a SMS number's e-mail address) when friends sign on to Xbox Live.

fun

Collection of small programs for fun & learning

pcor

Parallel computation of all-vs-all Pearson correlations

lein-condor

Parallelize Clojure on a Condor cluster.

h5df

Library and CLI for storing numeric data frames in HDF5

mrat

Methylated region analysis tool

GOGraph

.NET library for finding shortest paths in Gene Ontology.