ggirelli/ifpd2

This repository has been archived on 09/Mar/2022
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Language
Python
License
MIT License
Created about 5 years ago
Updated over 2 years ago

ggirelli/ifpd2

ggirelli

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ifpd2: a Python3.7+ package to build iFISH probes

oligo-melting

Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction, and melting curve estimation.

GitHub-Actions-Planet-GitHubUniverse2021-NA

Welcome to GitHub Actions planet, which lives among the GitHub Universe and is a place with full of joys, knowledges, and activities

iFISH-probe-design

iFISH Probe Design: a Python3 package to build iFISH probes.

python-click-autocomplete-example

Example on how to set up shell autocomplete for Python scripts.

easy-webmention-js

A simple JavaScript library to serve Webmentions via Webmention.io

ood-fish

Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)

fastx-barber

Python package to trim and extract flags from FASTA and FASTQ files.

radiantkit

A Python3 Radial Image Analysis Toolkit

pygpseq

Python3 package to analyse GPSeq images and manage TIFF files.

python-package-template

A Python3.8+ package template with workflows (linting and packaging), pre-commits, and issue templates.

gpseqc

Nuclear centrality estimation from GPSeq experiment.

iFISH4U

Custom routes, pages and files for iFISH4U website.

bioTrackBinner

Binning biological data tracks and producing RDS containing data.tables

GPSeq-RadiCal

R script for fast and streamlined Radiality Calculation from GPSeq data.

ggkaryo2

ggplot2-based karyotype plotting R package

gpseqc-snakemake

Snakemake workflow to run GPSeqC pipeline.

tepp

Tumor Evolution Paths Project

tema

TEMA (Tumor Evolution Manager and Analyzer)

SpectraScope

Interactive interface to visualize spectra and filter sets for any microscope. Easily customizable.

fish-probe-design

Suit to select set of oligomers as FISH probes from databases of locus-specific hybridizing oligomers.

GPSeq-source-data

Source data for GPSeq manuscript.