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oligo-melting
Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction, and melting curve estimation.GitHub-Actions-Planet-GitHubUniverse2021-NA
Welcome to GitHub Actions planet, which lives among the GitHub Universe and is a place with full of joys, knowledges, and activitiespython-click-autocomplete-example
Example on how to set up shell autocomplete for Python scripts.easy-webmention-js
A simple JavaScript library to serve Webmentions via Webmention.ioood-fish
Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)fastx-barber
Python package to trim and extract flags from FASTA and FASTQ files.radiantkit
A Python3 Radial Image Analysis Toolkitpygpseq
Python3 package to analyse GPSeq images and manage TIFF files.ifpd2
ifpd2: a Python3.7+ package to build iFISH probespython-package-template
A Python3.8+ package template with workflows (linting and packaging), pre-commits, and issue templates.gpseqc
Nuclear centrality estimation from GPSeq experiment.iFISH4U
Custom routes, pages and files for iFISH4U website.bioTrackBinner
Binning biological data tracks and producing RDS containing data.tablesGPSeq-RadiCal
R script for fast and streamlined Radiality Calculation from GPSeq data.ggkaryo2
ggplot2-based karyotype plotting R packagegpseqc-snakemake
Snakemake workflow to run GPSeqC pipeline.tepp
Tumor Evolution Paths Projecttema
TEMA (Tumor Evolution Manager and Analyzer)SpectraScope
Interactive interface to visualize spectra and filter sets for any microscope. Easily customizable.fish-probe-design
Suit to select set of oligomers as FISH probes from databases of locus-specific hybridizing oligomers.GPSeq-source-data
Source data for GPSeq manuscript.Love Open Source and this site? Check out how you can help us