gerstung-lab/ebmstate_paper_data_files

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gerstung-lab/ebmstate_paper_data_files

gerstung-lab

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MutationTimeR

An R package to time somatic mutations

SARS-CoV-2-International

International SARS-CoV-2 surveillance

Jupyter Notebook

AML-multistage

Code accompanying Precision oncology for acute myeloid leukemia using a knowledge bank approach

BaSISS

Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper

Jupyter Notebook

PCAWG-11

Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)

deepSNV

The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.

MDS-expression

R code for Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes

Delphi

Jupyter Notebook

sarscov2-b117

Spatiotemporal analysis of strain-specific B.1.1.7 SARS-CoV-2 infection dynamics

Jupyter Notebook

preAML

Code accompanying Prediction of AML risk in healthy individuals by Abelson, Collord, et al. (2018), Nature, 559:400-404

BarrettsProgressionRisk

An R package to process and predict risk of adenocarcinoma progression from shallow whole-genome sequencing data.

CHOCOLAT-G2P

Jupyter Notebook

ebmstate

An R package for Empirical Bayes MultiState models

ebsurv

SARS-CoV-2-Germany

SARS-CoV-2 genomic surveillance in Germany

Jupyter Notebook

MPN-multistage

MPN multistage calculator