genomic-medicine-sweden/nallo genomic-medicine-sweden/nallo

  • Stars
    star
    16
  • Rank 1,311,288 (Top 26 %)
  • Language Nextflow
  • License
    MIT License
  • Created over 1 year ago
  • Updated about 2 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
genomic-medicine-sweden/nallo
github

genomic-medicine-sweden

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

A long-read (PacBio and ONT) analysis pipeline written in Nextflow

More Repositories

1

tomte

A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient
Nextflow
11
star
2

jasen

Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
Nextflow
9
star
3

pgx

Pharmacogenomics pipeline
HTML
8
star
4

gms_16S

A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
Groovy
5
star
5

Twist_Solid

Pipeline for Solid tumours
Python
3
star
6

Information-specifications

3
star
7

poppy

Python
3
star
8

RareDisease_RNA_workflow

Nextflow
2
star
9

meta-val

nf-core/taxprofiler post-processing; verification of classification results; consensus maps
Nextflow
2
star
10

micro-site-data-sharing

This repo shares data between sites for the development of GMS-micro solutions.
1
star
11

gms_somatic

Placeholder for solid tumor bioinformatic workflow
Python
1
star
12

GMS-uploader

utility for uploading sequence and metadata to the NGP
Python
1
star
13

meta-vis

Visualisation of metagenomic analysis results
Python
1
star
14

Twist_Solid_pipeline_files

Design and filter files used by the pipeline
1
star