genepi/imputationserver genepi/imputationserver

  • Stars
    star
    78
  • Rank 412,246 (Top 9 %)
  • Language
    Java
  • License
    GNU Affero Genera...
  • Created over 8 years ago
  • Updated about 2 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
genepi/imputationserver
github

genepi

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

More Repositories

1

nf-gwas

A nextflow pipeline to perform state-of-the-art genome-wide association studies.
Nextflow
63
star
2

cloudgene

A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
Java
36
star
3

haplogrep3

Free mtDNA Haplogroup Classification Service
Java
21
star
4

imputationserver-docker

Docker Image for Michigan Imputation Server
Dockerfile
18
star
5

haplocheck

Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies
HTML
16
star
6

cloudgene-old

Please note that this repository is deprecated. Please use genepi/cloudgene
JavaScript
10
star
7

23andme-tools

Convert 23andMe data to VCFs
Java
9
star
8

mtdna-server-2

mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes
Nextflow
9
star
9

cloudflow

Cloudflow is a MapReduce and Spark pipeline framework to simplify the pipeline creation in biomedical research, especially in the field of Genetics.
Java
8
star
10

cdh5-hadoop-mrv2

Docker Image of Cloudera Hadoop MapReduce (MRv2, YARN)
Shell
3
star
11

imputationserver-aws

Running Michigan Imputation Server (MIS) on AWS EMR
Shell
3
star
12

phylotree-rcrs-17

HTML
3
star
13

ngs-class

Next Gen Sequencing Course - Medical University of Innsbruck
Nextflow
2
star
14

umi-pipeline-nf

Nextflow pipeline to analyze ONT UMI Sequencing data
Python
2
star
15

genomic-utils

Collection of tools to work with genomic datasets
Java
2
star
16

phylotree-fu-rcrs

HTML
2
star
17

imputationserver2

Nextflow
2
star
18

mitoverse

Documentation for the Mitoverse Platform
HTML
1
star
19

cloudgene-samples-old

Please note that this repository is *deprecated*. Please use genepi/cloudgene-examples
Perl
1
star
20

imputationserver-tutorial

A step by step tutorial for the TOPMed Workshop (April 30 - May 1 2018, Ann Arbor)
1
star
21

cdh5-hadoop-mrv1

Docker Image for Cloudera Hadoop MapReduce (MRv1)
Shell
1
star
22

thesis-clemens

Master Thesis Clemens Banas
Java
1
star
23

cloudgene-docker

Docker Image for Cloudgene
HTML
1
star
24

umit-biostatistics

Biostatistics 1 - https://genepi.github.io/umit-biostatistics/
1
star
25

genepi-libs

Genepi Libraries
Java
1
star
26

cloudgene-examples

Example applications to start with Cloudgene
HTML
1
star
27

pig-gene

Due to the vast progress in sequencing, data volumes in bioinformatics are increasing dramatically. Therefore, the aim of this work is the development of a graphical generation platform for Apache Pig scripts called PigGene to analyze data in a massively parallel way. Users are guided through the building process of scripts by an intuitive user interface and are able to generate workflow definitions for complex data queries on the fly. Generated scripts are ready to use and can be further executed directly on Cloudgene, a graphical MapReduce execution platform. PigGene can be extended by user scripts and supports especially inexperienced users in the area of bioinformatics.
Java
1
star
28

lpa-pipeline

detecting low-level variants in CNVs
Shell
1
star
29

imputationserver-utils

Java
1
star
30

vntr-calling-nf

HTML
1
star