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Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disordersOUTRIDER
OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq dataMMSplice_MTSplice
Tissue-specific variant effect predictions on splicingFRASER
FRASER - Find RAre Splicing Events in RNA-seqabsplice
concise
Concise: Keras extension for regulatory genomicsFRASER-analysis
Accompanying analysis code for the FRASER manuscriptsplicemap
SpeciesLM
OCR-Stats
MMSplice_paper
Analysis code of MMSplice paperwBuild
R project report builderdependencies_DNALM
Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elementsrCube
AbSplice_analysis
OUTRIDER-analysis
Accompanying analysis repository for the OUTRIDER paperManuscript_Avsec_Bioinformatics_2017
Code for Avsec et al, Bioinformatics 2017ALS-kaggle
Outlier prediction-based solution to Task1 of the End ALS Kaggle challengepy_outrider
py_outrider: a generalized framework for context-dependent outlier detection in omics datagfeat
Python genomic features extractor from raw filesautoCorrection
The autoencoder implementation for the OUTRIDER packagegene-embedding
Leukemia_outlier
dataviz
Data Analysis and Visualization in RAbExp
RNA_diagnostics_paper_figures
Manuscript_Cheng_RNA_2017
Analysis code for Cheng et al., RNA (2017)Cellular_energy_codon_analysis
Code for the data processing and analyses present on the manuscript: "Cellular energy regulates mRNA translation and degradation in a codon-specific manner".abexp-ukbb-trait-analysis
UK Biobank trait analysis with AbExp scoresLove Open Source and this site? Check out how you can help us