• Stars
    star
    32
  • Rank 801,539 (Top 16 %)
  • Language
    Jupyter Notebook
  • License
    MIT License
  • Created over 7 years ago
  • Updated almost 2 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Concise: Keras extension for regulatory genomics

More Repositories

1

drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
Python
133
star
2

OUTRIDER

OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
R
48
star
3

MMSplice_MTSplice

Tissue-specific variant effect predictions on splicing
Jupyter Notebook
39
star
4

FRASER

FRASER - Find RAre Splicing Events in RNA-seq
R
36
star
5

absplice

Python
33
star
6

FRASER-analysis

Accompanying analysis code for the FRASER manuscript
R
25
star
7

splicemap

Jupyter Notebook
18
star
8

SpeciesLM

Jupyter Notebook
13
star
9

spectralis

Python
9
star
10

OCR-Stats

R
6
star
11

MMSplice_paper

Analysis code of MMSplice paper
Jupyter Notebook
4
star
12

wBuild

R project report builder
Python
4
star
13

dependencies_DNALM

Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements
Jupyter Notebook
4
star
14

rCube

R
3
star
15

AbSplice_analysis

Python
3
star
16

OUTRIDER-analysis

Accompanying analysis repository for the OUTRIDER paper
TeX
3
star
17

Manuscript_Avsec_Bioinformatics_2017

Code for Avsec et al, Bioinformatics 2017
Jupyter Notebook
3
star
18

ALS-kaggle

Outlier prediction-based solution to Task1 of the End ALS Kaggle challenge
Jupyter Notebook
3
star
19

py_outrider

py_outrider: a generalized framework for context-dependent outlier detection in omics data
Python
2
star
20

gfeat

Python genomic features extractor from raw files
Python
2
star
21

autoCorrection

The autoencoder implementation for the OUTRIDER package
Jupyter Notebook
2
star
22

gene-embedding

Jupyter Notebook
2
star
23

Leukemia_outlier

R
2
star
24

dataviz

Data Analysis and Visualization in R
HTML
1
star
25

AbExp

Python
1
star
26

RNA_diagnostics_paper_figures

R
1
star
27

Manuscript_Cheng_RNA_2017

Analysis code for Cheng et al., RNA (2017)
HTML
1
star
28

Cellular_energy_codon_analysis

Code for the data processing and analyses present on the manuscript: "Cellular energy regulates mRNA translation and degradation in a codon-specific manner".
Jupyter Notebook
1
star
29

abexp-ukbb-trait-analysis

UK Biobank trait analysis with AbExp scores
Python
1
star