fulcrumgenomics/fqgrep

Stars
87
Rank 366,687 (Top 8 %)
Language
Rust
License
MIT License
Created over 2 years ago
Updated 2 months ago

fulcrumgenomics/fqgrep

fulcrumgenomics

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Grep for FASTQ files

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Tools for working with genomic and high throughput sequencing data.

dagr

A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs

fqtk

Fast FASTQ sample demultiplexing in Rust.

python-snakemake-skeleton

A skeleton repository for Snakemake pipepline(s) and a python command-line toolkit.

guide-counter

A better, faster way to count guides in CRISPR screens.

fgpyo

Quality of life improvements for Bioinformatics in Python.

fgsv

Tools for calling breakpoints and exploring structural variation.

pybedlite

Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)

sopt

An argument parsing library for Scala

pyfgaws

Python tools and APIs for working with AWS

stitch

Stitch is a toolkit for analysis of chimeric reads in sequencing data

nf-dotenv

Automatically source dotenv files into your Nextflow scope

setup-latch

commons

Common scala utilities

pooled-writer

A pooled writer and compressor library in Rust.

fgoxide

Quality of life improvements in Rust.

read-structure

read structures in rust

fgstr

Simple Tandem Repeat Genotyping for Duplex Sequencing

bgzf

rd4

JeanLuc

fg-idprimer

Command-line Tools to Identify Primers in high throughput sequencing data