friend1ws/sv_utils

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Python
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GNU General Publi...
Created almost 9 years ago
Updated almost 5 years ago

friend1ws/sv_utils

friend1ws

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package for analyzing GenomonSV results

nanomonsv

SV detection tool for nanopore sequence reads

pmsignature

R package for extracting mutation signatures from a list of somatic mutations

EBCall

an empirical Bayesian framework for mutation detection from cancer genome sequencing data

SAVNet

detection of mutations causing splicing change

iravnet

intron retention associated variant detection project

intron_retention_utils

script for extracting intron retention events

fusion_utils

utility for comparing fusion results

fusion_db

Database for fusion gene

annot_utils

scripts processing annotation data from UCSC

savnet_paper

resource for savant paper

PDL1_pipeline

script for CD274 project

cancer_gene_db

Database for known cancer genes

LDA-practice

practice code for LDA

genomon_rna_gce

Perform Genomon RNA pipeline using Google Compute Engine

centr_utils

utilities for centromere analysis

tenx_utils

utility functions for analyzing 10X genomics data

pmsignature_shiny

shiny programis for pmsignature

rankSynergy

a rank-based statistical test for measuring synergistic effects between two gene sets

ggseqlogo

A lightweight package for generating sequence logos based on ggplot2

SF3B1ness

R package for obtaining SF3B1ness score