friend1ws/EBCall

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Rank 820,005 (Top 17 %)
Language
Perl
Created about 12 years ago
Updated over 8 years ago

friend1ws/EBCall

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an empirical Bayesian framework for mutation detection from cancer genome sequencing data

nanomonsv

SV detection tool for nanopore sequence reads

pmsignature

R package for extracting mutation signatures from a list of somatic mutations

SAVNet

detection of mutations causing splicing change

iravnet

intron retention associated variant detection project

intron_retention_utils

script for extracting intron retention events

fusion_utils

utility for comparing fusion results

sv_utils

package for analyzing GenomonSV results

fusion_db

Database for fusion gene

annot_utils

scripts processing annotation data from UCSC

savnet_paper

resource for savant paper

PDL1_pipeline

script for CD274 project

cancer_gene_db

Database for known cancer genes

LDA-practice

practice code for LDA

genomon_rna_gce

Perform Genomon RNA pipeline using Google Compute Engine

centr_utils

utilities for centromere analysis

tenx_utils

utility functions for analyzing 10X genomics data

pmsignature_shiny

shiny programis for pmsignature

rankSynergy

a rank-based statistical test for measuring synergistic effects between two gene sets

ggseqlogo

A lightweight package for generating sequence logos based on ggplot2

SF3B1ness

R package for obtaining SF3B1ness score