frankkramer-lab/NDExEdit

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Created over 3 years ago
Updated over 2 years ago

frankkramer-lab/NDExEdit

frankkramer-lab

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Web-based editing of biological networks from the NDEx platform

MIScnn

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

miseval

a metric library for Medical Image Segmentation EVALuation

Jupyter Notebook

covid19.MIScnn

Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data

mully

R package to create, modify and visualize graphs with multiple layers.

aucmedi

a framework for Automated Classification of Medical Images

riadd.aucmedi

Multi-Disease Detection in Retinal Imaging based on Ensembling Heterogeneous Deep Learning Models

GERNERMED

GERNERMED is the first open neural NER model for medical entities designed for German data.

ensmic

An analysis on Ensemble Learning optimized Medical Image Classification with Deep Convolutional Neural Networks

GPTNERMED

GPTNERMED is a language model-generated, synthetic dataset and an open neural NER model for medical entities designed for German data.

rBiopaxParser

Parses BioPAX files (BioPAX Version 2 and BioPAX Version 3 are supported) and represents them in R. There is quite alot of documentation available for this package. See the reference manual and the vignette for examples! If you have any questions or suggestions... DONT BE SHY! Mail me! See package description for an email address.

miseval.analysis

Source code for the publication: Towards a Guideline for Evaluation Metrics in Medical Image Segmentation

GERNERMED-pp

GERNERMED++ is a transfer-learning-based open neural NER model for medical entities designed for German data.

ndexr

R client library for NDEx

RCX

R package implementing the Cytoscape Exchange (CX) format

Multipath

Integrating pathways and related knowledge in a multilayer framework

DrNote

DrNote is an open tagging tool for text annotation and entity linking based on OpenTapioca and WIkiData/Wikipedia. It provides an entity linking service with pre-trained data for medical annotations in multilingual settings. The processing of raw text as well as PDF by a tesseract backend is supported.

PACS2go

Towards a Portable Research PACS for Interdisciplinary Collaboration

DeepGleason

a System for Automated Gleason Grading of Prostate Cancer using Deep Neural Networks

FHIRgraph

A graph datatype structure definition for FHIR® (Fast Healthcare Interoperability Resources [hl7.org/fhir])

MISITcms-app

MISITcms - Assignment/Contest Management System for automatic code evaluation of students

reproducible-network-visualization

Reproducible Network Visualization

gene-expression-on-fhir

Implementing semantic interoperability of gene expression profiles using the HL7 FHIR standard

MetaRelSubNetVis

Multipath2Neo4j

Nursing-Quality-Indicators-in-German-FHIR-Implementations

Evaluation of the Availability of Nursing Quality Indicators in German FHIR Implementations