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COM-dFBA is a MATLAB based COMmunity Dynamic Flux Balance Analysis framework developed by the Chalmers iGEM 2018 team. For this work, we were nominated for best modeling at the Giant Jamboree.

metaGEM

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Python

187

SymbNET

Teaching materials for SymbNET course: from MAGs to GEMs

Jupyter Notebook

EMBOMicroCom

Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities

metaGEM_paper

Repo housing 💎 metaGEM paper results

unseenbio_metaGEM

metaGEM applied to unseenbio WGS sequencing samples

lichens

Metabolic modeling of lichen metagenomes

franciscozorrilla/Chalmers-iGEM2018

franciscozorrilla

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