fls-bioinformatics-core/galaxy-tools

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fls-bioinformatics-core/galaxy-tools

fls-bioinformatics-core

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FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.

genomics

Scripts, utilities and programs for genomic bioinformatics.

GFFUtils

Python module and utility programs for working with GFF files

auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

metagenomics

Scripts and utilities for running metagenomic analyses

RnaChipIntegrator

RnaChipIntegrator is a utility that performs integrated analyses of 'gene' data (a set of genes or other genomic features) with 'peak' data (a set of regions, for example ChIP peaks) to identify the genes nearest to each peak, and vice versa

pegs

PEGS: Peak-set Enrichment of Gene-Sets

bedUtils

Some Python utilities for working with BED format files.

proteomics-python2.7-proteomics-lib

A library supporting Proteomic data manipulation

SCRUM_single_cell_bioinformatics_workshop

This is a workshop to show step-by-step workflow of Single cell RNA-seq analysis

proteomics-mascot_log_reader

Software for interpreting Matrix Science Mascot log's

proteomics-perl5-proteomics-lib

A library supporting Proteomic data manipulation

HTS_SOLiD_Preprocessing

Archive of the SOLiD preprocessing scripts by Ariella Sasson & Todd Michael originally hosted at http://hts.rutgers.edu/filter