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phyluce
software for UCE (and general) phylogenomicsillumiprocessor
pre-process illumina readsedittag
edit distance sequence tags and helpersprotocols
Our laboratory repositoryseqtools
Tools for sequence and alignment manipulationsplitaake
demultiplex massively parallel sequencing databird-db
the application and database underlying birds.faircloth-lab.orgtapir
Tally Approximations of Phylogenetic Informativeness Rapidly (TAPIR)conda-recipes
bioinformatics program recipes for the conda package managerdemuxipy
Locate, error-correct, trim, and organize (hierarchically) sequence-tagged next-generation DNA readsuce-probe-sets
Repository of different outgroup databases for use building UCE treesitero
A strongly opinionated, iterative, guided contig assembly pipeline. Integrates (+error-correction), bwa-mem, bedtools, and samtools. MPI and multiprocessing aware.uce-probe-design
Code for designing UCE probescolony2-helpers
code to help run colony2mp-est
modified version of mpest with CLI parametersdata-theme
msatcommander-gs
A grown-up version of msatcommander for genome-scale datapd-ht
dimensions
Code associated with our NSF Dimensions of Biodiversity grantradcap
Software for processing data from RADcapcookiecutter-supermike-examl
2011-fairclothetal-systbiol-uce
[Unsupported] Code used in Faircloth et al. Ultraconserved Elements Anchor Genetics MarkersLove Open Source and this site? Check out how you can help us