evanfloden/sra-dump-nf

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Created over 8 years ago
Updated over 6 years ago

evanfloden/sra-dump-nf

evanfloden

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Some ideas for pulling experiments directly from the SRA with Nextflow

lncRNA-Annotation-nf

A Nextflow lncRNA Annotation Pipeline based on STAR, Cufflinks and FEELnc

tuxedo-nf

A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown

concTree

Using Alignment Uncertainty from Many Multiple Sequence Alignments to Create Consensus Trees

nf-module-demo

Demo for Nextflow modules and components proposal

vast-tools-nf

A Nextflow Implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data

dpa-analysis

Nextflow Pipeline for the analysis of Double Progressive Alignment (DPA)

Jupyter Notebook

paraMSA

Using uncertainty in multiple sequence alignments for phylogenetic trees and bootstrap support values

nf-toxomix

OpenRiskNet pipeline for TGX case study: toxicology predictions based on transcriptomic profiles

stable-diffusion-nf

Proof-of-concept pipeline for stable diffusion in Nextflow and Tower

phyvaluate-nf

Evaluation of Phylogenetic Trees from Simulated Data