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sketchy
Genomic neighbor typing of bacterial pathogens using MinHash πvircov
Viral genome coverage evaluation for metagenomic diagnostics π©Έnetview
Mutual nearest neighbor graphs and data visualization for genomic population networks πscrubby
Background depletion/extraction using k-mer and/or alignment methods πΌbrick
BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons π¦BRIGAD3
D3 and Vue component for visualization of bacterial genome assemblies from nanopore sequence datanetviewP
NetView for Pythonsccion
Genotyping toolkit and long-read assembly pipelines for Staphylococcus aureus *under construction* πachilles
Artificial neural networks for taxonomic nanopore signal classification in host microbiomes *update soon* π³shinyGenes
Gene Segment Plotsnetviewr
Graph decorators for data and population structure visualization πdartqc
Quality Control for DArT SNPsporemongo
Nanopore signal management and neural network training data compiler in MongoDB *update soon* π±nctc-tools
Data mining and analysis pipeline for complete bacterial genome assemblies from the NCTC πthicket
Parallel bootstrapping for maximum-likelihood phylogenies wrapping RAxML-NG, PhyML and FastTree πΏgeneD3
Sequence Comparisons D3nf-mvp
A minimum viable Nextflow pipeline (Bioinformatics Clinic)melioidosis
machine
Welcome to the Machineca-mrsa
Emergence of community-associated MRSAcerebro
Metagenomic diagnostics stack for low abundance sample types and clinical reportingpnodes
Pretty print pbsnodes for Torque/PBS.critter
BEAST models for pathogen transmission dynamics in PythonLove Open Source and this site? Check out how you can help us