esteinig/melioidosis

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2
Language
Python
Created over 7 years ago
Updated almost 7 years ago

esteinig/melioidosis

esteinig

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nanoq

Minimal but speedy quality control for nanopore reads in Rust 🐻

sketchy

Genomic neighbor typing of bacterial pathogens using MinHash 🐀

vircov

Viral genome coverage evaluation for metagenomic diagnostics 🩸

netview

Mutual nearest neighbor graphs and data visualization for genomic population networks 🐙

scrubby

Background depletion/extraction using k-mer and/or alignment methods 🐼

brick

BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons 🦠

BRIGAD3

D3 and Vue component for visualization of bacterial genome assemblies from nanopore sequence data

netviewP

NetView for Python

sccion

Genotyping toolkit and long-read assembly pipelines for Staphylococcus aureus *under construction* 🍇

achilles

Artificial neural networks for taxonomic nanopore signal classification in host microbiomes *update soon* 🌳

shinyGenes

Gene Segment Plots

netviewr

Graph decorators for data and population structure visualization 🐙

dartqc

Quality Control for DArT SNPs

poremongo

Nanopore signal management and neural network training data compiler in MongoDB *update soon* 🌱

nctc-tools

Data mining and analysis pipeline for complete bacterial genome assemblies from the NCTC 🐛

thicket

Parallel bootstrapping for maximum-likelihood phylogenies wrapping RAxML-NG, PhyML and FastTree 🌿

geneD3

Sequence Comparisons D3

nf-mvp

A minimum viable Nextflow pipeline (Bioinformatics Clinic)

machine

Welcome to the Machine

ca-mrsa

Emergence of community-associated MRSA

cerebro

Metagenomic diagnostics stack for low abundance sample types and clinical reporting

pnodes

Pretty print pbsnodes for Torque/PBS.

critter

BEAST models for pathogen transmission dynamics in Python