esteinig/achilles esteinig/achilles

  • Stars
    star
    7
  • Rank 2,294,772 (Top 46 %)
  • Language
    Python
  • License
    MIT License
  • Created over 6 years ago
  • Updated over 3 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
esteinig/achilles
github

esteinig

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Artificial neural networks for taxonomic nanopore signal classification in host microbiomes *update soon* 🌳

More Repositories

1

nanoq

Minimal but speedy quality control for nanopore reads in Rust 🐻
Rust
102
star
2

sketchy

Genomic neighbor typing of bacterial pathogens using MinHash 🐀
Rust
44
star
3

vircov

Viral genome coverage evaluation for metagenomic diagnostics 🩸
Rust
25
star
4

netview

Mutual nearest neighbor graphs and data visualization for genomic population networks 🐙
R
17
star
5

scrubby

Background depletion/extraction using k-mer and/or alignment methods 🐼
Rust
13
star
6

brick

BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons 🦠
Svelte
12
star
7

BRIGAD3

D3 and Vue component for visualization of bacterial genome assemblies from nanopore sequence data
Python
10
star
8

netviewP

NetView for Python
Python
8
star
9

sccion

Genotyping toolkit and long-read assembly pipelines for Staphylococcus aureus *under construction* 🍇
Python
7
star
10

shinyGenes

Gene Segment Plots
R
6
star
11

netviewr

Graph decorators for data and population structure visualization 🐙
R
6
star
12

dartqc

Quality Control for DArT SNPs
Python
6
star
13

poremongo

Nanopore signal management and neural network training data compiler in MongoDB *update soon* 🌱
Python
4
star
14

nctc-tools

Data mining and analysis pipeline for complete bacterial genome assemblies from the NCTC 🐛
Python
4
star
15

thicket

Parallel bootstrapping for maximum-likelihood phylogenies wrapping RAxML-NG, PhyML and FastTree 🌿
3
star
16

geneD3

Sequence Comparisons D3
HTML
3
star
17

nf-mvp

A minimum viable Nextflow pipeline (Bioinformatics Clinic)
Nextflow
3
star
18

melioidosis

Python
2
star
19

machine

Welcome to the Machine
Python
2
star
20

ca-mrsa

Emergence of community-associated MRSA
R
2
star
21

cerebro

Metagenomic diagnostics stack for low abundance sample types and clinical reporting
Rust
2
star
22

pnodes

Pretty print pbsnodes for Torque/PBS.
Python
1
star
23

critter

BEAST models for pathogen transmission dynamics in Python
Python
1
star