enormandeau/wgs_sample_preparation

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Created about 6 years ago
Updated 5 months ago

enormandeau/wgs_sample_preparation

enormandeau

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Trim, Align to genome, Deduplicate, Realign WGS sequencing samples

Scripts

Collection of various scripts

stacks_workflow

RADseq workflow built around STACKS

ncbi_blast_tutorial

Short introduction to command line NCBI blast tools

gawn

Genome Annotation Without Nightmares

barque

Environmental DNA metabarcoding taxonomic identification

go_enrichment

Transcripts annotation and GO enrichment Fisher tests

snplift

Convert genetic variant coordinates across genome assemblies

meditation-timer

Simple meditation timer for Linux in Python

mapcomp

Genetic Map Comparison

slurm_cheatsheet

Some useful commands to interact with the SLURM job scheduler

intro_R_2018

Formation à distance d'introduction à R

python_exercises

A set of Python3 exercises to develop solid scripting foundations

github_tutorial

Introduction to Git and GitHub

coelopa_fastsim

Coelopa inversion selection simulation in Rust

grinder_simulations

Framework to create in silico eDNA samples

club_bioinfo_ibis

Club de Programmation de l'IBIS

introR_2020

Formation à distance d'introduction à R - Édition 2020

tmux_cheatsheet

Useful tmux infos, commands and config

space_is_money

Tools to manage disk space usage on *NIX systems

headcopy

Improve cw (morse code) head copying speed

bwa-meth_pipeline

WGBS pipeline using bwa-meth and MethylDackel

intro_R

Formation à distance d'introduction à R