elhumble/manta_pop_gen_2022

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Created over 1 year ago
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elhumble/manta_pop_gen_2022

elhumble

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🧬🌊Code for our manuscript "Comparative population genomics of manta rays has global implications for mangement"

SHO_analysis_2020

R scripts for running downstream analysis of resequencing data

SHO_roh_load_2022

🖥️🧬 Code for our manuscript "Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx"

minION_species_ID

Species ID workflow with ONT amplicon data

SHO_reseq_2020

Read mapping and SNP calling run on UoE compute cluster

primerdesignR

R package for designing primers

snp_filtering

Transcriptomic SNP filtering workflow

shiny_wildlifedetectR

🦏🐅🐘 Shiny app for running key wildlife forensic and population genetic analyses

Agaz_85K_workflow_2018

🇦🇶 Workflow for processing data from the Agaz 90K SNP chip

grains

⚖🍚 R package for calculating how much water you need for your grains

map2slim

GOslim annotation

mobulid_phylo

Workflow for generating mobulid phylogenetics figures 📉🐟

SHO_reseq_2022

🖥️🧬 Code for our manuscript "Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx"

wildlifedetectR

🐘🐅🦏 R package for running key wildlife forensic and population genetic analyses