eggzilla/GCC_2017_The_RNA_Workbench

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Created over 7 years ago
Updated over 7 years ago

eggzilla/GCC_2017_The_RNA_Workbench

eggzilla

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RNA workbench presentation, Galaxy Community Conference 2017, Montpellier France

RNAlien

RNAlien - unsupervised RNA family model construction

Genbank

Genbank format tools and parser

cmv

Visualize HMMs, CMs and their comparisons

BlastHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

SelectSequencesFromMSA

Tool to select representative sequences from a multiple sequence alignment

RNApredator

BiobaseHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice

ClustalParser

Parse output of Clustal tools

ViennaRNAParser

memexml

Haskell cabal libary for parsing Meme motif finder xml output

AlienServer

StockholmAlignment

Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.

TaxonomyTools

Tools to process and visualize NCBI taxonomy data

BioHMM

Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.

BiobaseEnsembl

Ensembl related functions and datastructures

Taxonomy

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.

smiles

Haskell cabal libary for parsing smiles strings used to represent molecules

supplementer

BiobaseHTTPTools

Tools for querying bioinformatics web resources

Phylogeny

Parse, process and compute phylogeny data

RNAzParser

Haskell cabal libary for parsing RNAz output

RNAplexParser

Parse output of RNAplex

BiobaseHTSTools

RNAInvaders

A video game inspired by science.

massmailer

Simple tool for sending bulk emails

CMCws

CMcompare Webserver