eead-csic-compbio/vcf-filter eead-csic-compbio/vcf-filter

  • Stars
    star
    2
  • Language
    Java
  • License
    MIT License
  • Created over 8 years ago
  • Updated about 8 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
eead-csic-compbio/vcf-filter
github

eead-csic-compbio

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Java tool to filter an input VCF file a la carte, based on HTSJDK and Apache commons CLI.

More Repositories

1

get_homologues

GET_HOMOLOGUES: a versatile software package for pan-genome analysis
Perl
109
star
2

allopolyploids

PhyloSD: Phylogenomic Subgenome Detection pipeline
Perl
11
star
3

chloroplast_assembly_protocol

A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads
C
11
star
4

metagenome_Pfam_score

Protocol for finding informative protein families and then using them to score metagenomic sets.
HTML
9
star
5

bioinformatics

Bioinformatics resources and best-practices for beginners
TeX
7
star
6

scripting_linux_shell

A collection of recipes to start scripting in the linux command line
Perl
6
star
7

primers4clades

Automated pipeline for the design of PCR primers for cross-species amplification of novel sequences
Perl
4
star
8

barley-agroclimatic-association

Association with high-resolution climate data reveals selection footprints in genomes of barley landraces across the Iberian peninsula
HTML
3
star
9

bioinformatica_estructural

Este material presenta algunos algoritmos para el estudio de la estructura molecular de proteínas y ácidos nucleicos. Introduce problemas (y estrategias para resolverlos) desde la estructura primaria a la cuaternaria. A lo largo hay referencias a artículos y ejercicios que a veces requieren conocimientos de programación.
TeX
2
star
10

coexpression_motif_discovery

Discovering cis-regulatory motifs in proximal promoters of plants in RSAT::Plants
HTML
2
star
11

EEADannot

Manual curation of selected DNA motifs and cis regulatory sites, mostly from plants
Perl
1
star
12

kmeleon

Pipeline for k-mer count analysis of genomic diversity
Python
1
star
13

barleyGO

Software to annotate barley sequences with Gene Ontology terms
Go
1
star
14

split_pairs

split_pairs.pl is a simple and efficient utility for pre-processing NGS sequence reads in FASTQ and FASTA formats, suited particularly for the task of sorting pair end reads and for modifying their headers with Perl-style regular expressions
C
1
star