eead-csic-compbio/bioinformatics eead-csic-compbio/bioinformatics

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  • Language
    TeX
  • License
    GNU General Publi...
  • Created about 4 years ago
  • Updated 11 months ago
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eead-csic-compbio/bioinformatics
github

eead-csic-compbio

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Repository Details

Bioinformatics resources and best-practices for beginners

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chloroplast_assembly_protocol

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metagenome_Pfam_score

Protocol for finding informative protein families and then using them to score metagenomic sets.
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scripting_linux_shell

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primers4clades

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barley-agroclimatic-association

Association with high-resolution climate data reveals selection footprints in genomes of barley landraces across the Iberian peninsula
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8

vcf-filter

Java tool to filter an input VCF file a la carte, based on HTSJDK and Apache commons CLI.
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9

bioinformatica_estructural

Este material presenta algunos algoritmos para el estudio de la estructura molecular de proteínas y ácidos nucleicos. Introduce problemas (y estrategias para resolverlos) desde la estructura primaria a la cuaternaria. A lo largo hay referencias a artículos y ejercicios que a veces requieren conocimientos de programación.
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coexpression_motif_discovery

Discovering cis-regulatory motifs in proximal promoters of plants in RSAT::Plants
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EEADannot

Manual curation of selected DNA motifs and cis regulatory sites, mostly from plants
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kmeleon

Pipeline for k-mer count analysis of genomic diversity
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Software to annotate barley sequences with Gene Ontology terms
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split_pairs

split_pairs.pl is a simple and efficient utility for pre-processing NGS sequence reads in FASTQ and FASTA formats, suited particularly for the task of sorting pair end reads and for modifying their headers with Perl-style regular expressions
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