edamontology/edamontologyDocs

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edamontology/edamontologyDocs

edamontology

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Documentation for EDAM.

edamontology

EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data life cycle. Targetting usability by diverse users, EDAM's structure is relatively simple, divided into 4 sections: Topic, Operation, Data, and Format.

edam-browser

Stand-alone, lightweight, and fast JavaScript browser for EDAM and other ontologies

edammap

A tool for mapping various text input to EDAM ontology concepts

pubfetcher

A Java command-line tool and library to download and store publications with metadata by combining content from various online resources

edam-bioimaging

Ontology of bioimage informatics operations, topics, types of data, and data formats. EDAM-Bioimaging is an extension of the EDAM ontology (edamontology.org) dedicated to bioimaging data analysis, and developed in an open collaboration including partners from NEUBIAS (neubias.org), COMULIS (comulis.eu), and ELIXIR (elixir-europe.org)..

edam-popovers

A Firefox & Chrome extension that displays detailed information about EDAM concepts

edam2json-js

Javascript library to convert EDAM to JSON/JSON-LD

edam-ontology.py

edam2json

utility to export EDAM to various sorts of JSON formats (JSON-LD, bio.tools JSON)

caseologue

Validation tools for the EDAM ontology

edam-sandbox

Miscellaneous files for test purposes

Jupyter Notebook