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fasterize
High performance raster conversion for modern spatial data 🚀🌏▦EpiTator
EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.awesome-parasite
A curated list of host-parasite informationcontainer-template
Containerised R workflow templatedoltr
A client for dolt databasesHP3
Repository for Host-Pathogen Phylogeny Project. Paper DOI: 10.1038/nature22975relic
Tools for working with version-controlled data science workflowslemis
R package providing access to data on wildlife imports into the United Statesehastyle
R Markdown templates for EHA documentscites
Quick access to all data in the CITES wildlife trade databaseyenpathy
Yen's K Shortest Paths in R, Quicklyflirt
FLIRT uses airline flight schedule data to map the commercial flight network. It shows direct flights from a selected location, and can simulate passengers taking multi-leg itineraries.wahis
Animal outbreak data scraped from the WAHIS databasediagnostic-dashboard
GRITS uses natural language processing to extract disease-related information from text, including disease names, symptoms, dates, locations, case and death counts, and more.formstools
Tools for working with ODK XLSFormsmpx-diagnosis
Supplement to: Enhanced surveillance of monkeypox in Bas-Uélé, Democratic Republic of Congo: the limitations of symptom-based case definitionshotspots2
This code powers the models for the paper "Global hotspots and correlates of emerging zoonotic diseases".parse-server-amazon-ses-email-adapter
Send parse-server template emails with Amazon SES.pubcrawler
PubCrawler uses the EpiTator framework (known at time of writing as Annie) to resolve toponyms in the PubMed Central Open Access Subset. It was used to create the estimate of reporting bias in the paper "Global hotspots and correlates of emerging zoonotic diseases".mantle
An open-source platform for biosurveillance & One Health researcheha-ma-handbook
EcoHealth Alliance Modeling & Analytics Handbookspatialsampling
Shiny App for Spatial Samplingamr-analysis
Global patterns and correlates in the emergence of antimicrobial resistance in humansmetaflu
Functions for Avian Influenza Metapopulation Simulationamphibian_trade
Documenting amphibian trade into the United Statesgrits-api
GoodQuestion
Mobile application for taking trigger based surveyssars_cov_risk
Data and code to support: A strategy to assess spillover risk of bat SARS-related coronaviruses in Southeast Asiaeidith
⚠️ DEPRECATED ⚠️ Data is now at data.usaid.gov/Global-Health-Security-in-Development-GHSD-/PREDICT-Emerging-Pandemic-Threats-Project/tqea-hwmrtater
Manual annotation interfacemeteor-jenkins
A Jenkins API wrapper for Meteorwab-net-website
GVP_Science
Data and Code to reproduce the supplementary materials of Carroll et al. 2018, "The Global Virome Project."pmcvec
Word embeddings for biomedical scientific literaturegideon
Resources for gideon analysismisc-eha-automations
Automated workflow that triggers for all organizational actionsodk_quality_control
Open Data Kit Data Quality Control Workflowsannie
This project has moved to https://github.com/ecohealthalliance/EpiTator.repel-infrastructure
promed-clustering
t11
Scripts for loading NLP annotations into a SPARQL Databasegrits-net-consume
2017-06-16-ehn-workshop
Materials for EcoHealthNet 2017 Workshop on Eco-Epidemiological Modelingeidith-cleaning-reports
flirt-simulation-service
bsve-integration
opendatakit
Presentation on Open Data Kittargets-mermaid-test
Test for Target Version and Mermaid Rendering Issuesgeoname-annotator-training
Training and evaluation scripts for the EpiTator geoname annotatoreha-geoname-lookup
nia-monitor
Novel infectious Agent Monitoring Appamr-db
AMR emergence events data cleaning and compilationgithubactions
Workflow Automation with GitHub Actionsdisease-forecasting
predict-behav-report
Template for behavioral data analysisflirt-consume
Data ingestion project for FLIRTrepelpredict
containerTemplateUtils
A set of utility functions for working with the container-template-repo templatelqas
Lot Quality Assurance Sampling (LQAS): Theory and Applicationeidr
ecohealthalliance.r-universe.dev
An R-Universe for EcoHealth Alliance Packagesgrits-api-release
xlsform
XLSForm: Tips, tricks, gotchas, and workaroundsinfrastructure
Automation code related to jenkins and docker based infrastructureeh-server-workflow-run
Outlines how you can run various analytic workflows on EHA infrastructureWABNet-spatial
Code used to produce figures in final report for WABNet projectone-health-stats
bd-econ-backup
complexsurveys
Complex Survey Sampling and AnalysisERA
EcoHealth Realtime Analysis - dashboard for EHA application statisticsideeal-app
repeldata
Client package for accessing REPEL project dataehaproj-template
eidr-connect
EIDR Connect takes the data extracted by GRITS and structures it to reconstruct disease events as they are reported across different documents.Love Open Source and this site? Check out how you can help us