eacooper400/LDanalysis

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Language
R
Created about 7 years ago
Updated about 7 years ago

eacooper400/LDanalysis

eacooper400

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A few simple scripts to calculate and plot LD using functions from the R genetics package

GWAS_Pipelines

Instructions and helpful R code for Running GEMMA and GAPIT

Rio

Scripts and command lines used in the Rio comparative genomics and transcriptomics project

dadiScripts

A set of Python scripts for running migration models in dadi

formatConversion

A collection of Perl scripts to convert between various DNA sequencing and SNP data formats.

SangerSeq_SNPCalling

Scripts and instructions for processing Sanger (ABI) sequence files

RILanalysis

R scripts for finding and plotting recombination breakpoints in a RIL population

SAP_PlantGenome

A collection of scripts, command lines, and instructions for the analyses performed in "Genome-Wide Association Studies of Grain Yield Components in Diverse Sorghum Germplasm"

HapMap_Helpers

A set of Perl scripts to perform various functions with HapMap format SNP files