eacooper400/GWAS_Pipelines eacooper400/GWAS_Pipelines

  • Stars
    star
    11
  • Rank 1,694,829 (Top 34 %)
  • Language
    R
  • Created about 7 years ago
  • Updated about 7 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
eacooper400/GWAS_Pipelines
github

eacooper400

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Instructions and helpful R code for Running GEMMA and GAPIT

More Repositories

1

Rio

Scripts and command lines used in the Rio comparative genomics and transcriptomics project
R
3
star
2

LDanalysis

A few simple scripts to calculate and plot LD using functions from the R genetics package
R
2
star
3

dadiScripts

A set of Python scripts for running migration models in dadi
Python
1
star
4

formatConversion

A collection of Perl scripts to convert between various DNA sequencing and SNP data formats.
Perl
1
star
5

SangerSeq_SNPCalling

Scripts and instructions for processing Sanger (ABI) sequence files
Perl
1
star
6

RILanalysis

R scripts for finding and plotting recombination breakpoints in a RIL population
R
1
star
7

SAP_PlantGenome

A collection of scripts, command lines, and instructions for the analyses performed in "Genome-Wide Association Studies of Grain Yield Components in Diverse Sorghum Germplasm"
Perl
1
star
8

HapMap_Helpers

A set of Perl scripts to perform various functions with HapMap format SNP files
Perl
1
star