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dynbenchmark
Comparison of methods for trajectory inference on single-cell data 🥇dyno
Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕dynmethods
A collection of 50+ trajectory inference methods within a common interface 📥📤dynverse
A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍dyngen
Simulating single-cell data using gene regulatory networks 📠anndata
Annotated multivariate observation data in Rdynplot
Visualising single-cell trajectories, including comparisons between two models 📈funkyheatmap
Visualising data frames as funky heatmaps 📊babelwhale
Talking to Docker and Singularity containersdynguidelines
Selecting the optimal trajectory inference based on a given dataset and user input 🔮dynwrap
A common data format and inference environment for single-cell trajectories 📦dyntoy
Toy synthetic data for testing and prototyping trajectory inference methods 🎲dyndimred
Dimred methods for TIdynbenchmark_results
Contains the results from the dynbenchmark evaluation, see https://github.com/dynverse/dynbenchmarkdyngen_manuscript
dyneval
Metrics to compare two or more trajectories ⚖dynutils
Common Functionality for the 'dynverse' Packagesdynparam
competition
Topcoder single-cell trajectory inference competitiontravis_scripts
Helper scripts for testing containers on Travisdyncli
CLI helper package for creating TI containersti_paga
funky_cover
ti_monocle_ica
ti_scorpius
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