dynverse/dyngen_manuscript

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Language
TeX
Created over 5 years ago
Updated over 3 years ago

dynverse/dyngen_manuscript

dynverse

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dynbenchmark

Comparison of methods for trajectory inference on single-cell data 🥇

dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

dynmethods

A collection of 50+ trajectory inference methods within a common interface 📥📤

dynverse

A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍

dyngen

Simulating single-cell data using gene regulatory networks 📠

anndata

Annotated multivariate observation data in R

dynplot

Visualising single-cell trajectories, including comparisons between two models 📈

funkyheatmap

Visualising data frames as funky heatmaps 📊

babelwhale

Talking to Docker and Singularity containers

dynguidelines

Selecting the optimal trajectory inference based on a given dataset and user input 🔮

dynwrap

A common data format and inference environment for single-cell trajectories 📦

dyntoy

Toy synthetic data for testing and prototyping trajectory inference methods 🎲

dyndimred

Dimred methods for TI

lmds

Landmark Multi-Dimensional Scaling

dynbenchmark_results

Contains the results from the dynbenchmark evaluation, see https://github.com/dynverse/dynbenchmark

dyneval

Metrics to compare two or more trajectories ⚖

dynutils

Common Functionality for the 'dynverse' Packages

dynparam

competition

Topcoder single-cell trajectory inference competition

travis_scripts

Helper scripts for testing containers on Travis

dyncli

CLI helper package for creating TI containers

ti_paga

funky_cover

ti_monocle_ica

ti_scorpius