dwinter/genome_factory

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R
Created over 5 years ago
Updated over 3 years ago

dwinter/genome_factory

dwinter

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scripts and recipies for working on Epichloe genomes

pafr

Read, manipulate and visualize 'Pairwise mApping Format' data in R

repeatR

read and analyse RepeatMasker output

mmod

Differentiation statistics in R

Fungal-Foray

Working directory of of my attempt to visualize fungi-host relationships in NZ forests

rensembl

Get Ensembl data in R using the REST API

freqseq

Simple tool for calculating frequencies of "read alleles" in BAM file

accuMUlate

code for calling mutatons from MA lines

kakapo_aspergillosis

Working directory for analysis of kākāpō _Aspergillus_ isolates

pafr-demo

A repository with code to demonstrate complete analyses using pafr and minimap2

rentrez_ms

WIP on a manuscript for rentrez (at last!)

mdm

simulating and fitting mixtures of Dirichlet multinationals in R