duopeng/midgut_oocyst_segmentation

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Language
Python
License
MIT License
Created about 3 years ago
Updated over 1 year ago

duopeng/midgut_oocyst_segmentation

duopeng

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Perform oocyst segmentation in mercurochrome stained mosquito midgut

image_merge-z-stack_and_stitch

Convert multiple z-stacks of different views into a single panoramic view with extended focus

Large-gene-family-search-pipeline

get-flank-of-gRNA-target

Shiny-gene-families

Visualize and cluster gene family members based on genetic distance

compile-gRNA-and-targets-for-EuPaGDT-batch-job-

JuncSeq

Extract splice junction sequences and make base-frequency plots

Recombination-detection-pipeline-for-large-gene-families

Automates detection of recombination events in large gene families (works with gene families with >1000 genes)