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bioc2016singlecell
Bioconductor workshop: Analysis of single-cell RNA-seq data with R and BioconductorSingleCellExperiment
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.zinb_analysis
Data analysis and simulations for the ZINB-WaVE paperRUVSeq
Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the official development version.ThrivingInBioinformatics
learn2count
Structure learning based for zero-inflated negative binomial datapeixoto2015_tutorial
Tutorial to reproduce the analysis of Peixoto et al. (2015)archive-RUVSeq
Archived version of RUVSeqmbkmeans
K-means clustering for large single-cell datasetsrnaseq_meetup
archive-SingleCellExperiment
This is the archived version of SingleCellExperiment with the history before Bioc submission.archive-zinbwave
Archived version of the zinbwave package. All future development will be done on https://github.com/drisso/zinbwavearchive-scRNAseq
Archived version of the scRNAseq Bioconductor package. All future development will be done at https://github.com/LTLA/scRNAseqbioc2019singlecell
awst
Asymmetric Winsorization per Sample Transformationx94
Code and data to reproduce the analysis of Naka et al.compgen_berlin2016
EDASeq
Clone of the Bioconductor repository for the EDASeq package, see https://bioconductor.org/packages/devel/bioc/html/EDASeq.html for the official development version.awst_analysis
Code to reproduce the analyses of the AWST paperarchive-EDASeq
Archived version of EDASeqreproducible_research
Topics on reproducible researchdeconsgl
Deconvolution of RNA-Seq Via Sparse Group Lassostructure_learning
Code to reproduce the analyses of Hue Nguyen et al. (2020)Love Open Source and this site? Check out how you can help us