douglasgscofield/dispersalDiversity

Stars
1
Language
R
Created over 12 years ago
Updated over 1 year ago

douglasgscofield/dispersalDiversity

douglasgscofield

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Analyse individual and genetic diversity of dispersal processes in biological populations

bioinfo

Various bioinformatics tools

PacBio-utilities

Collection of utilities for working with PacBio-based assemblies

tinyutils

Collection of tiny utilities for working on data streams

hcluster

My git clone of Heng Li's hcluster from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/

readGenalex

R package for reading GenAlEx-format genotype files

dispr

Degenerate In-Silico PcR

sparseMEM-big

Big-genome modification to sparseMEM from Khan et al.

fastrank

R package providing fast ranking for integer and numeric vectors, an alternative to calling .Internal(rank(...))

snpEffect

Determine the effect of individual SNPs and indels

nestedRanksTest

R package providing a mixed-model Mann-Whitney-Wilcoxon test with nested ranks

yoruba

Query and modify BAM file contents; provides functions missing from some other tools

add-to-Qiime-DB

Small set of scripts to ease the expansion of a Qiime reference database

R-package-utilities

Collection of files, templates, tips, etc. to ease the creation and maintenance of R packages

seqtools-4.28

My version of https://www.sanger.ac.uk/resources/software/seqtools/ 4.28, adds extra dotplot options

MLGtest

Implements a conservative test for asexuality based on the number of observed multilocus genotypes

jmers

Kmer-guided processing of jumping reads