dkoslicki/MultiresolutionBloomFilters

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Created about 7 years ago
Updated about 6 years ago

dkoslicki/MultiresolutionBloomFilters

dkoslicki

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CMash

Fast and accurate set similarity estimation via containment min hash

MetaPalette

Metagenomic profiling and phylogenetic distances via common kmers

MinHashMetagenomics

Fast approximation of similarity for sets of very different sizes

EMDeBruijn

Earth mover's distance between de Bruijn graphs

EMDUnifrac

Computation of Unifrac using Earth Movers Distance

ARK

Aggregation of kmers: preprocessing step for kmer-based metagenomics taxonomic profiling techniques

Quikr

Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing.

CAMIKraken

A Dockerfile and wrappers for the Kraken metagenomic classifier

PressPurt

The core algorithm for the Koslicki & Novak JMB paper (2018)

TAMPA

A collection of tools to visualize CAMI profiling outputs

NCATS

CAMIARKQuikr

The ARK+Quikr algorithm in a format for the CAMI competition

CommonKmers

Strain specific taxonomic profiling tool

MedianUnifrac

Computing medians with respect to the UniFrac metric