dimenwarper/pandio

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Language
Python
Created about 8 years ago
Updated about 8 years ago

dimenwarper/pandio

dimenwarper

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Access python pandas in an "awk-like" manner in the command line -- inspired by Rio

awesome-bayes

List of resources for bayesian inference

chainlearn

Mini module with syntax sugar for pandas/sklearn

molxspec

ML models to convert molecules to ESI mass spectra and maybe back again

Jupyter Notebook

simppl

A simple probabilistic programming language

Jupyter Notebook

stardocker

Docker container for a Starcluster launcher that can be easily configured to run docker applications

scimitar

Single Cell Inference of MorphIng Trajectories and their Associated Regulation (SCIMITAR)

Jupyter Notebook

colab_biowrappers

Bio and chem tools wrapped in colabs

Jupyter Notebook

gett

Genotype, expression, and trait toolset

hyperparameter.space

gexpfoundation_hackathon

Code repository for our submission at BioxML hackathon, team LLM

Jupyter Notebook

genoracle

A simple python module for gene set annotation, enrichment testing, consultation of gene/pathway databases and ontologies.

pyroconductor

A high-level interface to access commonly-used R tools from python using the low-level r2py

drug_sensitivity_RelNets

Drug sensitivity prediction with lots of gene/drug/cell line interaction information.

blk

unicode blocks can plot anything!!

scsuite

single-cell Scalable Unified Inference of Trajectory Ensembles

ashley_scripts

parsegeo

Python utilities to parse data from the gene expression omnibus

til-about-jobs

Discrete hints, thoughs on job searches (focused on academia and biotech field because that's what I know)

llm-for-clinical-variants

Jupyter Notebook

embodi

Framework for large language model "embodiment", e.g. props some "sensors" and "actuators" on the LLM

plsrecord

Lightweight data provenance record keeper