dimenwarper/gexpfoundation_hackathon

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dimenwarper/gexpfoundation_hackathon

dimenwarper

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Code repository for our submission at BioxML hackathon, team LLM

awesome-bayes

List of resources for bayesian inference

chainlearn

Mini module with syntax sugar for pandas/sklearn

molxspec

ML models to convert molecules to ESI mass spectra and maybe back again

Jupyter Notebook

simppl

A simple probabilistic programming language

Jupyter Notebook

stardocker

Docker container for a Starcluster launcher that can be easily configured to run docker applications

scimitar

Single Cell Inference of MorphIng Trajectories and their Associated Regulation (SCIMITAR)

Jupyter Notebook

colab_biowrappers

Bio and chem tools wrapped in colabs

Jupyter Notebook

gett

Genotype, expression, and trait toolset

hyperparameter.space

genoracle

A simple python module for gene set annotation, enrichment testing, consultation of gene/pathway databases and ontologies.

pyroconductor

A high-level interface to access commonly-used R tools from python using the low-level r2py

drug_sensitivity_RelNets

Drug sensitivity prediction with lots of gene/drug/cell line interaction information.

blk

unicode blocks can plot anything!!

scsuite

single-cell Scalable Unified Inference of Trajectory Ensembles

ashley_scripts

parsegeo

Python utilities to parse data from the gene expression omnibus

til-about-jobs

Discrete hints, thoughs on job searches (focused on academia and biotech field because that's what I know)

llm-for-clinical-variants

Jupyter Notebook

embodi

Framework for large language model "embodiment", e.g. props some "sensors" and "actuators" on the LLM

plsrecord

Lightweight data provenance record keeper

pandio

Access python pandas in an "awk-like" manner in the command line -- inspired by Rio