• Stars
    star
    34
  • Rank 766,985 (Top 16 %)
  • Language
    Python
  • License
    GNU General Publi...
  • Created over 4 years ago
  • Updated 4 months ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!

More Repositories

1

nlp-qrmine

Qualitative Research support tools in Python
Jupyter Notebook
45
star
2

fhiry

FHIR to pandas dataframe for data analytics, AI and ML!
Jupyter Notebook
31
star
3

fhir-questionnaire-render-react

Render FHIR Questionnaire as a web form using FHIRFormJS
JavaScript
19
star
4

fhirformjs

NPM module to convert FHIR Questionnaire JSON to JSON Schema for form rendering.
TypeScript
19
star
5

kedro-multimodal

Template for multi-modal machine learning in healthcare using Kedro. Combine reports, tabular data and images using various fusion methods.
Python
16
star
6

ckblib

Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
Java
14
star
7

hephaestus

🌠 Hephaestus - ETL and ML tools for OHDSI - OMOP CDM
Python
13
star
8

oscar-latest-docker

🐳 This is a script to deploy OSCAR EMR in a docker container.
Shell
12
star
9

omopfhirmap

OMOP <-> FHIR mapper
Java
12
star
10

ardio

Convert academic journal articles to audiobooks!
Python
10
star
11

umlsjs

💗 npm package for accessing UMLS REST APIs (unofficial)
TypeScript
10
star
12

skinmesh

skinmesh: Machine learning for facial analysis
JavaScript
9
star
13

fhirql

🔥 Multipurpose FHIR server boilerplate using spring boot.
Java
9
star
14

quick-ctakes

QTakes - Apache cTAKES™ REST API on Quarkus
Java
7
star
15

omopcdm-dot-net

📓 .Net library for OMOP CDM management
C#
5
star
16

journal-paper-thesis-word-to-latex

Collaboratively write journal papers or thesis in MS-Word and compile it to LaTeX using any template.
TeX
5
star
17

ctakes-spring-boot

Apache cTakes for clinical document annotation packaged as a spring-boot app with REST api
Java
5
star
18

kedro-tf-image

Kedro pipelines for preprocessing images for TensorFlow.
Python
5
star
19

dadpy

The swiss army knife for discharge abstract database (DAD).
Jupyter Notebook
5
star
20

openmrs-module-skinhelpdesk

An openMRS module for dermatology to map lesions on a body image. Video: https://youtu.be/wy5JPX6AWoM
JavaScript
4
star
21

fhirform-server

Server for the FHIRForm framework for managing forms as FHIR Questionnaire
Java
4
star
22

goscar-export

🔥 CSV to FHIR (For OSCAR EMR EForm Export)
Go
4
star
23

lesion-mapper

💊 LesionMapper is a tool and a method for standardized mapping of lesions in Dermatology.
Vue
4
star
24

cui-embed

Gensim wrapper for the clinical (CUI) embeddings
Python
3
star
25

dicom-dermatology

DICOM 4 Dermatology
3
star
26

vue-smart-on-fhir

🌟 Vue boilerplate for smart-on-fhir apps.
Vue
3
star
27

skinhelpdesk-app

Prototype Flutter App to consume SkinHelpDesk.com APIs for cosmetic dermatology.
Dart
3
star
28

fhirform-vue

Convert FHIR Questionnaire to JSON for form rendering using Vue
TypeScript
3
star
29

python3-ml

🏃 OpenFaaS-cli template for python3 ML model deployments as microservices
Python
3
star
30

rasaonfhir

Chat interface to FHIR
Python
2
star
31

openmrs-deploy-kubernetes

Deploy OpenMRS EHR on Kubernetes
2
star
32

devpost-typingdna-ehealth

Devpost Hackathon
JavaScript
2
star
33

openmrs-owa-react-boilerplate

An OpenMRS OWA Template Using React and Redux.
JavaScript
2
star
34

openmrs-module-drishti

👀 Drishti-EMR - openmrs-module-drishti
JavaScript
2
star
35

medprompt

2
star
36

pydad

ML Prediction Models with Discharge Abstract Database
Python
1
star
37

kedro-tf-text

Kedro pipelines for preprocessing text and tabular data for multi-modal ML in TensorFlow.
Python
1
star
38

paperaj

Collaboratively write journal papers in MS-Word and compile it to LaTeX!
TeX
1
star
39

dad-gym-env

💗 OpenAI Gym Env for Reinforcement Learning on Discharge Abstract Database
Python
1
star
40

dermatology

A curated list of computational dermatology resources
1
star
41

openmrs-module-opspost

Post obs to OpenMRS without login (For mHealth Apps and sensors)
Java
1
star
42

dermatology-image-tagger

Python implementation of the popular Dermatology Image Tagger voted as one of the top 50 most useful software in dermatology.
Python
1
star
43

openmrs-module-fhirform

An OpenMRS module to render a FHIR Questionnaire as a Web Form
JavaScript
1
star
44

gptcommit

A command-line tool that generates commit messages for your Git commits using a language model.
Python
1
star
45

kedro-tf-utils

Kedro pipelines for multimodal ML in TensorFlow.
Python
1
star
46

ehealth-react-boilerplate

Ehealth React-Redux Boilerplate for developing web applications that interact with Innovation Lab's DHDR.
JavaScript
1
star
47

fastai-text-docker

🐳 Docker with fastai core and text (spacey) libraries
Dockerfile
1
star
48

meteor-toa

Transfer of Accountability App for COVID-19 frontlines
Vue
1
star
49

drishti-plan

👀 Drishti-Plan: Machine Learning module for Drishti framework
Python
1
star