deprekate/genotate

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Language
Python
License
GNU General Publi...
Created over 3 years ago
Updated 29 days ago

deprekate/genotate

deprekate

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Prokaryotic and phage genome annotation tool

PHANOTATE

PHANOTATE: a tool to annotate phage genomes.

PHACTS

A simple program to classify the lifestyle of phages.

prfect

Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes

fastpath

A program to find the path through a network of nodes.

circualign

A tool to align circular genomes on a common feature

RepeatFinder

A python package to quickly find repeats in a DNA sequence

aragorn

tRNA and tmRNA finding

kmeans

A python implementation of the kmeans algorithm that functions as a drop in for sklearn

ReadMapper

ReadMapper is a program that maps sequencing reads to a nucleotide backbone, and then creates a publication quality figure.

HotKnots

Fast, and best, DNA/RNA folding algorithm

bigint

An implementation of a fixed point integer datatype for the C programming language.

kmer_counter

A fast method for counting rare kmers in nucleotide sequences

read_genbank

A module to read and parse the features of a genbank file

parann

Source code for a neural network using back propogation, and in parallel using MPI

goodorfs

Code to classify open reading frames into coding and noncoding

goodgenes

A program to predict protein coding genes from potential open-reading frames

bestblasthit

A small utility to parse blast output and return only the best hit

deprekate.github.io

Multivariate-Entropy-Distance

A new non-supervised gene prediction algorithm for bacterial and archaeal genomes

rbs-finder

Ribosomal Binding Site Finder

smith-waterman

A perl implementation of the Smith-Waterman amino acid alignment algorithm