dekkerlab/Docker-Machines

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Created almost 7 years ago
Updated over 6 years ago

dekkerlab/Docker-Machines

dekkerlab

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Docker Files and docker-compose files for various machines

cworld-dekker

perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)

crane-nature-2015

code associated with crane-nature-2015, 10.1038/nature14450

matrix_paper

Scripts and notebooks used in Akgol Oksuz et al. paper

Jupyter Notebook

cLIMS-docker

cLIMS repository running on Docker Contaienrs

ALV-repo

Scripts and notebooks for ALV's publication

Jupyter Notebook

MC-3C_scripts

Scripts used to process and analyse the data in the MC-3C paper

giorgetti-nature-2016

code associated with giorgetti-nature-2016, /nature

matrix_shared

collection of scripts, config files and other materials related to the Matrix project

Jupyter Notebook

cLIMS

Zagelbaum_etal_NSMB_2022

Notebooks for Hi-C analyses related to "Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization".

Jupyter Notebook

chimera-tie-public

a split-read alignment process for mapping multi-chimeric reads

Abramo_2019

some scripts and notebooks for the Abramo et al 2019 paper

Jupyter Notebook