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EVcouplings
Evolutionary couplings from protein and RNA sequence alignmentsDeepSequence
A generative latent variable model for biological sequence families.plmc
Inference of couplings in proteins and RNAs from sequence variationSeqDesign
Protein design and variant prediction using autoregressive generative modelsEVmutation
Mutation effects predicted from sequence co-variationneural-fingerprint-theano
Visual Convolutional Neural Graph Fingerprints in Theano/LasagneNEMO
Learning protein structure with a differentiable simulatorvariational-synthesis
Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AISTATS, 2022).BEAR
This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"MuE
A package for making MuE observation models in Edward2.3D_from_DMS_Extended_Data
variants_pharmacogenes
This repository contains the code used to analyse data and produce figures for the manuscript "Genetic variation in human drug-related genes"persistent-vi
Variational Bayes for discrete undirected modelsdetectDesign
toolkit for finding likely cas9 off-target binding and effect on gene expression, designing sgRNAs and pairs of sgRNAs with minimal off-target effect on gene-expressionnanobody-polyreactivity
Polyreactivity WebsiteGELMMnet
Generalized linear mixed model elastic netLove Open Source and this site? Check out how you can help us