Discover dbmi-pitt/SocialMediaDataScience Open Source project

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dbmi-pitt

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Data Science module - text analytics, Natural Language Processing, and Machine Learning on Social Media (twitter) data

public-PDDI-analysis

migrates from swat-4-med-safety/SW-DDI-catalog/drug-drug-interactions

HTML

UMLS-Graph

UMLS Graph database for semantic queries

Jupyter Notebook

bioinf_teachingNLP

NLP education notebooks for biomedical informatics students

Jupyter Notebook

DIKB-Micropublication

Micropublication and Open Data Annotation for drug-drug interaction evidence synthesis

Python

pk-ddi-role-identifier

A pipeline for deriving a classifier that tags the drugs mentioned within a potential drug-drug interaction statement as having the precipitant or object role.

Java

dbmi-annotator

based on annotator.js, an annotation framework enable user account and annotation permission management and templating annotation plugin in biomedical domain.

HTML

ddi-cds

All drug-drug interaction CDS rules written in Drools from the AHRQ funded projects

Java

Merged-PDDI

Code to prototype the new Drug Interaction Knowledge Base

Java

DIKB-Evidence-analytics

A suite of programs that implement the DIKB principals of representing drug drug interaction evidence and knowledge.

Web Ontology Language

ACT-Network

ACT - Accrual to Clinical Trials Network Repository

HTML

ubkg

The Unified Biomedical Knowledge Graph

Python

iDIA_Rules

This repository contains the Java and Drools files necessary to work with the "Individualized Drug Interaction Alerts (iDIA)" project.

Java

NER-pddi-table-parsing

HTML

COMRADEdb

xmeso

Information Extraction for National Mesothelioma Virtual Bank

Java

docker-proteus

Dockerized version of Proteus data characterization suite

CCRI-Data-Characterization

Data characterization tools used across multiple CCRI projects

EvidenceType-Calculator

Serve form of evidence type related questions for various type of high level types (ex. DDI clinical trial, Experiments, Case Report, etc))

Python

np-terminology-imports

A natural product terminology that maps botanical natural product Latin binomials to chemical constituents (e.g., metabolites), common names, and spelling variations. The vocabulary is represented using the OMOP vocabulary schema but is not dependent on OMOP/OHDSI tools.

Python

np_name_finder

A project to use different computational approaches to identify natural product mentions in unstructured character strings.

Jupyter Notebook

slideviewer

SlideViwer is a high level java API that describes the behaviour of a generic digital slide image viewer.

Java

annotator.js

JavaScript

docker-dbmi-annotator

HTML

CCRI-402

Center for Clinical Research Informatics

CSS

TCRN

TIES Cancer Research Network (TCRN)

u-of-pitt-spl-ddi-v2.0

Drug drug interaction NLP program migrated from google code swat-4-med-safety

Python

scrubber-evaluation

Supports evaluation of de-identification software for clinical notes

Java

mBiasPrevention

u-of-pitt-SPL-drug-NER

PostScript

drools-ohdsi-test

test for using drools rules

Java

openslideserver

OpenSlide Whole Slide Image Server

Java

ODIE

The Ontology Development and Information Extraction(ODIE) framework is a NLP workbench to run various UIMA pipelines coupled with different ontologies and terminologies.

Common Lisp

ocelot

Ocelot - obtain census tract and Walk Score data (walk, bike, and transit scores) based on geocoordinates

Python

dbmi-pitt/SocialMediaDataScience

dbmi-pitt

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