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public-PDDI-analysis
migrates from swat-4-med-safety/SW-DDI-catalog/drug-drug-interactionsSocialMediaDataScience
Data Science module - text analytics, Natural Language Processing, and Machine Learning on Social Media (twitter) dataUMLS-Graph
UMLS Graph database for semantic queriesbioinf_teachingNLP
NLP education notebooks for biomedical informatics studentsDIKB-Micropublication
Micropublication and Open Data Annotation for drug-drug interaction evidence synthesispk-ddi-role-identifier
A pipeline for deriving a classifier that tags the drugs mentioned within a potential drug-drug interaction statement as having the precipitant or object role.dbmi-annotator
based on annotator.js, an annotation framework enable user account and annotation permission management and templating annotation plugin in biomedical domain.ddi-cds
All drug-drug interaction CDS rules written in Drools from the AHRQ funded projectsMerged-PDDI
Code to prototype the new Drug Interaction Knowledge BaseDIKB-Evidence-analytics
A suite of programs that implement the DIKB principals of representing drug drug interaction evidence and knowledge.ACT-Network
ACT - Accrual to Clinical Trials Network Repositoryubkg
The Unified Biomedical Knowledge GraphiDIA_Rules
This repository contains the Java and Drools files necessary to work with the "Individualized Drug Interaction Alerts (iDIA)" project.NER-pddi-table-parsing
xmeso
Information Extraction for National Mesothelioma Virtual Bankdocker-proteus
Dockerized version of Proteus data characterization suiteCCRI-Data-Characterization
Data characterization tools used across multiple CCRI projectsEvidenceType-Calculator
Serve form of evidence type related questions for various type of high level types (ex. DDI clinical trial, Experiments, Case Report, etc))np-terminology-imports
A natural product terminology that maps botanical natural product Latin binomials to chemical constituents (e.g., metabolites), common names, and spelling variations. The vocabulary is represented using the OMOP vocabulary schema but is not dependent on OMOP/OHDSI tools.np_name_finder
A project to use different computational approaches to identify natural product mentions in unstructured character strings.slideviewer
SlideViwer is a high level java API that describes the behaviour of a generic digital slide image viewer.annotator.js
docker-dbmi-annotator
CCRI-402
Center for Clinical Research InformaticsTCRN
TIES Cancer Research Network (TCRN)u-of-pitt-spl-ddi-v2.0
Drug drug interaction NLP program migrated from google code swat-4-med-safetyscrubber-evaluation
Supports evaluation of de-identification software for clinical notesmBiasPrevention
u-of-pitt-SPL-drug-NER
drools-ohdsi-test
test for using drools rulesopenslideserver
OpenSlide Whole Slide Image ServerODIE
The Ontology Development and Information Extraction(ODIE) framework is a NLP workbench to run various UIMA pipelines coupled with different ontologies and terminologies.ocelot
Ocelot - obtain census tract and Walk Score data (walk, bike, and transit scores) based on geocoordinatesLove Open Source and this site? Check out how you can help us