davisidarta/topometry

Stars
93
Rank 359,906 (Top 8 %)
Language
Python
License
MIT License
Created over 3 years ago
Updated over 1 year ago

davisidarta/topometry

davisidarta

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Systematically learn and evaluate manifolds from high-dimensional data

dbMAP

A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions of samples on a personal laptop. Adds high-dimensional big data intrinsic structure to your clustering and data visualization workflow.

fastlapmap

Fast Laplacian Eigenmaps: lightweight multicore LE for non-linear dimensional reduction with minimal memory usage. Outperforms sklearn's implementation and escalates linearly beyond 10e6 samples.

humanlung

Code for the human lung integrated cell atlas generation as in Sidarta-Oliveira et al.

celltometry

A python library to orchestrate topological single-cell data analysis.

pca-eval

Evaluate PCA's performance and appropriateness in single-cell genomics

Jupyter Notebook