Discover davidaknowles/tensor_gp Open Source project

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Rank 2,861,937 (Top 57 %)
Language Stan
Created over 8 years ago
Updated over 7 years ago

davidaknowles

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Code for Tensor Gaussian Process Regression for predicting drug combination synergy, developed for the AstraZeneca-Sanger Drug Combination Prediction DREAM Challenge 2015: https://www.synapse.org/#!Synapse:syn4231880/wiki/235645

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

203

eagle

An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified from RNA-seq

gprn

Gaussian Process Regression Network code

tf_net

A custom conv net for the DREAM ENCODE challenge

Python

pydt

Pitman Yor diffusion tree sampler

C++

dox

Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes

suez

R package for mapping response-expression QTLs

gamma_sgvb

MATLAB

dpvc

Dirichlet Process Variable Clustering

MATLAB

splice_wave

Jupyter Notebook

nsfa

Nonparametric Bayesian Sparse Factor Analysis

MATLAB

eagle1S

Re-implementation of EAGLE using Stan.

lacrosse

lacrosse: LAtent ChaRacteristics Of Small-molecule SEnsitivity. David A Knowles, Gina Bouchard, Sylvia Plevritis.

epidiff

Python

pisquared

R package to estimate sharing between two arrays of p-values

C++

davidaknowles/tensor_gp

davidaknowles

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