Discover davidaknowles/eagle Open Source project

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R
Created about 11 years ago
Updated about 3 years ago

davidaknowles

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An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified from RNA-seq

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

203

gprn

Gaussian Process Regression Network code

tf_net

A custom conv net for the DREAM ENCODE challenge

Python

pydt

Pitman Yor diffusion tree sampler

C++

dox

Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes

tensor_gp

Code for Tensor Gaussian Process Regression for predicting drug combination synergy, developed for the AstraZeneca-Sanger Drug Combination Prediction DREAM Challenge 2015: https://www.synapse.org/#!Synapse:syn4231880/wiki/235645

Stan

suez

R package for mapping response-expression QTLs

gamma_sgvb

MATLAB

dpvc

Dirichlet Process Variable Clustering

MATLAB

splice_wave

Jupyter Notebook

nsfa

Nonparametric Bayesian Sparse Factor Analysis

MATLAB

eagle1S

Re-implementation of EAGLE using Stan.

lacrosse

lacrosse: LAtent ChaRacteristics Of Small-molecule SEnsitivity. David A Knowles, Gina Bouchard, Sylvia Plevritis.

epidiff

Python

pisquared

R package to estimate sharing between two arrays of p-values

C++

davidaknowles/eagle

davidaknowles

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